Scaffold Ga0070744_10040904

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10040904
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1364
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F010915	Metagenome / Metatranscriptome	297	Y
F018368	Metagenome / Metatranscriptome	235	N
F033034	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100409042	F006546	N/A	MKWKYIGNRTGDAAKGEQYIVEADELTEVYMKNQPYPQTVNVYVVQPPSPRNNWLKSQVGDIIKICNPYYEMAAYSHPGFVPVKE*
Ga0070744_100409044	F010915	AGTAG	MKQKLPPHNMIVIVQVGLDLYTLSYVKYEECDIQQCIKYDLSSEDVSQFLGNN*
Ga0070744_100409045	F018368	N/A	MTITTLTTRGQKISNQIVFSADVIEIKQGPFSFTALTESITTEEDKIVLKYEVDGDMCNHEITNDMLNNAHVEDGHIVFAWGTQLSISLYKLAVLNAVE*
Ga0070744_100409046	F033034	N/A	MKVAKLTKKAQDIVNQIMSADAVDIDHGRVDERVYYGNIHLTGEGLEFNVNVNGEIGEMIISNESLNAAVVSDGTIEIDGEHIPNNEFG