Scaffold Ga0070744_10013213

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10013213
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2448
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021537	Metagenome	218	Y
F039139	Metagenome	164	N
F060908	Metagenome / Metatranscriptome	132	Y
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100132131	F021537	GGAG	MQTSEQKIKLLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMVWLMWSMAINKKDTVWLFQAEKFAKRYLSLNPNGYR
Ga0070744_100132132	F103253	AGGA	MEEKVWIYLSKTGTGFELAGTDIISGFDAFVNADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIFEGYQRQNVLTGFAKNVDIPENLKLAIFKNYTFDEEDLELEKNAN*
Ga0070744_100132135	F039139	GGTGG	MSMFLNSFEFTTEDITTILRAHDTDISIQELVEISDALDYDSIARTALMFDDIESQTQASLSHAEDLMIMDGLWITEPKRFQMP*
Ga0070744_100132136	F060908	N/A	MTRKLDYTISETISARSKNRILVPKKYIKYIGLNVGFVAHVTNLNGAFIVSACPTPESKKFMVDKDGAVRFYGNNSKYKIMIADNVVVLNEYVS*