Scaffold Ga0070744_10006555

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10006555
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3491
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F012219	Metagenome / Metatranscriptome	282	Y
F078722	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100065552	F078722	GGAG	MTASEWTTIGISVSGAVISLLVYIIQFLHRMDKRGAVDTATIKDHGHRIGRLEGATSELKTQVTKLEAKQ*
Ga0070744_100065553	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGVRTSEAHDISELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVQVNSLKVGK*
Ga0070744_100065554	F012219	AGGTGG	MNLQNFRIEKEPAPSTDWRVFGDMIDDYGNILGTFGQDGTSVNIWWVTQDEPFQYGIVQQFANIMAQQIVAGTAE*