Scaffold Ga0070744_10006500

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10006500
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3505
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003299	Metagenome / Metatranscriptome	495	N
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100065004	F004234	N/A	MNFINLFKRDNTYFSNWTTDYDSDVYIAGTIEPFTYNASETDDEYMSLFILSDANLKLLKSKL*
Ga0070744_100065007	F003327	N/A	MTEFTQLAIEVQDAIANGEYTHQKYLRFREWYFQSYEGSKRNAARDFRMFDLMYGLDVPIKNNDNEDI*
Ga0070744_100065008	F003299	N/A	MKIYKVVYKTFDYWNGPVKLVTRIVEAYDPDHVKQLIQKNDDLIILIEEI*