Scaffold Ga0070744_10004182

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10004182
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4338
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024558	Metagenome / Metatranscriptome	205	Y
F035768	Metagenome / Metatranscriptome	171	Y
F039639	Metagenome / Metatranscriptome	163	Y
F065787	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000418211	F035768	AGGA	MRITIEDRLLASYHAQQMRLRVRGDEEYRARVEKQAFEKIIVDRVSRNLRLGLNKGTNIDIEV*
Ga0070744_100041822	F065787	N/A	MRKLEYYEIRENCKLIDYDLKLAGKGKLWVEVYRDDQYEYRALFPDVSDWSAMPMTILTHKLHETQTDLS*
Ga0070744_100041825	F024558	AGGA	MIVILYTEDFEPIIPIDLPLWLLDRLEQEGAVRVAVNRPKGFTDVRIPVGNLDCETPTVRIRYEKLRWHDGSLKTLLVTPDEELALTLNPEWLPGQRAPIQLYLNTVRKMHEELIKQIRKNQD*
Ga0070744_100041828	F039639	AGGTGG	MNIDREFIKWFYEEQYPEQGSNRRQCYGMTAGTTNINTIDYWMREAFRAGAQAATHNYEVNALEQFEAFDIKRNYPL*