Scaffold Ga0070744_10002356

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10002356
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5718
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015731	Metagenome / Metatranscriptome	252	Y
F020909	Metagenome	221	Y
F033806	Metagenome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000235612	F015731	N/A	MGVNMSVESGTGVVDFDANTAAWLEQYKSAVAKIKELQEVADVARAHIERALGDNETGMFLNRPVVRYSFVESKRFDTKRAREILPSQVIEALEVVSTSRRFSIVSED*
Ga0070744_100023563	F020909	GGAG	MITKRGKRVRAIAILIGLIVVWQVASNLWWVGIDAPSAEFFGWCWGSMSECVVL*
Ga0070744_100023568	F033806	AGG	MNLEKQPRDPLFSIHNHSDGHIALYLEEQDAVKDLVQDVVGAYELDDLDLLRHSADRSVKSENYFEHLDNARDNLGENAPLLCNMSEQEALILAEDLIRAVKFARIGREAQGNYPSLKAVK*