Scaffold Ga0070744_10001168

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10001168
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7780
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008081	Metagenome / Metatranscriptome	339	Y
F024318	Metagenome	206	Y
F044503	Metagenome	154	Y
F047062	Metagenome	150	Y
F093880	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000116810	F024318	GGA	MSNYLYLGKFIKRPGDLAPKGVKSTYQTEKLPFNETFERIWQLASMKP*
Ga0070744_1000116816	F044503	N/A	MRRRNLTEYEKIVIFEKWQDRVPTKVIAMEMGVSYMCIFNQLKKRCLVG*
Ga0070744_1000116818	F093880	GGTGG	MKAEDLQKMNDLNRDIWGMIVQAQQTKNWALMEVNLKRLYSLQKKYINLINIMDYEVKGTTLMLQDEIRVRNQFEKQWFKDVATRSGSYQDMKENIDKHFPT*
Ga0070744_100011683	F008081	N/A	MEESEIINPFGFGKASRVIDENRKPTEWWIDYVSINQAIAENEFYILFEDGCLVKKGRSKFRSSQYLKGDRFRSFKEFHESAV*
Ga0070744_100011685	F047062	N/A	MNDSENYFDKEITFTHEGQDYLWIGDYTIETFGEEESEWAPPYGEMEVKIDHTQSLTSYEHGFDVIPTPAIMEALELEIERNY*