Basic Information | |
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Taxon OID | 3300006484 Open in IMG/M |
Scaffold ID | Ga0070744_10001168 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7780 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (15.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River Estuary | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008081 | Metagenome / Metatranscriptome | 339 | Y |
F024318 | Metagenome | 206 | Y |
F044503 | Metagenome | 154 | Y |
F047062 | Metagenome | 150 | Y |
F093880 | Metagenome / Metatranscriptome | 106 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070744_1000116810 | F024318 | GGA | MSNYLYLGKFIKRPGDLAPKGVKSTYQTEKLPFNETFERIWQLASMKP* |
Ga0070744_1000116816 | F044503 | N/A | MRRRNLTEYEKIVIFEKWQDRVPTKVIAMEMGVSYMCIFNQLKKRCLVG* |
Ga0070744_1000116818 | F093880 | GGTGG | MKAEDLQKMNDLNRDIWGMIVQAQQTKNWALMEVNLKRLYSLQKKYINLINIMDYEVKGTTLMLQDEIRVRNQFEKQWFKDVATRSGSYQDMKENIDKHFPT* |
Ga0070744_100011683 | F008081 | N/A | MEESEIINPFGFGKASRVIDENRKPTEWWIDYVSINQAIAENEFYILFEDGCLVKKGRSKFRSSQYLKGDRFRSFKEFHESAV* |
Ga0070744_100011685 | F047062 | N/A | MNDSENYFDKEITFTHEGQDYLWIGDYTIETFGEEESEWAPPYGEMEVKIDHTQSLTSYEHGFDVIPTPAIMEALELEIERNY* |
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