Scaffold Ga0070744_10001113

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10001113
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7933
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F002303	Metagenome / Metatranscriptome	573	Y
F020010	Metagenome	226	Y
F056617	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_1000111310	F056617	N/A	MRKSLKRENLLKNSKGQYRYQFNWVSGGFNDIWAKNLKEFKSELKRQFGNSNLDVNYNTLHKATASGAKSWDTAGNMMCW*
Ga0070744_1000111314	F002092	N/A	MRTTNQKAIDYLEANPIVKNFLDKVNAERKEYYEKADMPNQYSELTVEIGNKFIRLWQGTGCWGFISRVDDVLKGSPIKKGDLLKAATWKAPAKHARGNIIDGSARFGVYGPEYL*
Ga0070744_1000111317	F020010	N/A	MATSNFHNVNATHIFAVQLEDEWAYEDLVYNLESEFNIHNDYSDYGKTDPNELRSYSSRSLGSFSTSLTIGDDEVEMYVTPVIRSGYYEGCNLDWHVTLYVNGYQDDTYADDANVLRISNEYVDFIETIYSQYSEPLGVTARFSNGETIYHKVA*
Ga0070744_100011139	F002303	N/A	MDIREKCYERATKFAIEYGFTNVSEHIFDVMVSIMCTRDKSSYAGGGFVQAVVANDLYLALSRADTDCRNNIFLLAMCKQNCFVNEYDY*