Scaffold Ga0070744_10000201

Overview

Basic Information

• Taxon OID: 3300006484
• Scaffold ID: Ga0070744_10000201
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16287
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Columbia River Estuary
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002997	Metagenome / Metatranscriptome	514	Y
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F024113	Metagenome / Metatranscriptome	207	Y
F043944	Metagenome	155	Y
F054875	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070744_100002011	F002997	N/A	MAIARFEQITVNNLAFAKSSFGEQTTAQTTWFRTRARVQSVANSLKISEKYRLYQDVVNFILNYTPNTRTMVRNQNLYSINYNGYDWRIDNIRESDDRMTVVILAYRTDPVTAV*
Ga0070744_1000020112	F014737	GAG	MTTINAVTGSQINHAEFVKLTVGNAATVYTFCNAAAPITVGGITFANLGALLNVGDVQRDIKATSDDMTIALTGIDPTNVGIILGNDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVSITEDFNSEARTRIATCSISCSSMRRILENRLSGVKTNQNNWQFIYTGDTSMNRVAQISNTYFDFGSPPMTQTQASETTVTMDNNSGGGDAP*
Ga0070744_1000020113	F023109	GGAGG	MIRQATRYDIPRLLEIVEAYAYENPIKKLGESCNHFPRYVEELLFSIIQGRGFIFVDSNLRGAIVAYKSSNIWSPKVKELNELLWWVEPEYRNGTVGGRLWKAFDERAQAMLKAGDVDFVCTSISANGPLIDYTRRGYKALGATFVRE*
Ga0070744_1000020116	F024113	GGA	MAIFNKNTLAQVSGFDNPILAGELVWNQKTYWNLTFTNSATSLPIDLTGATLNAQIVRRELSNIIDTRNGLTFDIADYNPAPAAIPLTITNIVAAAGSCTLVIDASAWSLMSTDPELEINAADPVGYSGRVKVSFPVSGTTPADDSIIFLLFLVRSDGVIVL*
Ga0070744_100002018	F054875	AGG	MTKFSSAFGDKYQTNRKNLLIRSFELGGHTFKVRIPLVAESDAIYKKVSEPDEETIEKVYQEITKPLRQFENNQTEEFKFTDDDILVDGRSMREAAKNKAITEARITEFFKLLVPEMEGVTLEDLTYADIEEEFPISVQMQIVEKIGEVISPTYREARGN*
Ga0070744_100002019	F043944	N/A	MIFNGHTLETIAELDDVTLVNIQTMYADGMVGNYGVLTQLATLTNGVFNYMRTANSPPYKLANILGSAYDYIYPPLSDDKKKAAVNDSLLAFMQQAQGFDKTLFGVKDG*