Scaffold Ga0099972_13130860

Overview

Basic Information

• Taxon OID: 3300006467
• Scaffold ID: Ga0099972_13130860
• Source Dataset Name: Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: JGI facility at Oak Ridge National Laboratory, Brown University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 918
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Coastal Sediment Microbial Communities From Rhode Island, Usa

Source Dataset Sampling Location

• Location Name: Rhode Island
• Coordinates
  • Lat. (^o): 40.435
  • Long. (^o): -70.483
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065790	Metagenome / Metatranscriptome	127	Y
F087205	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099972_131308601	F087205	N/A	MANKNTYCNDPGEAACLDELIKLVNDELTIACQIPFTVPKKEINNIIQRAKKYFYKIYEDSVEQMYIALPAGALHKPSFKQGVPYGKGQDKETITNKGNIDNPRGIVKMPSRVYSVNDVFEIGGFSGEDGGFGSTSFNAGDVDFSIDKFIYNDVYGAGIGSENLMYYVVNSLFMDNARQVLIPQISYT
Ga0099972_131308602	F065790	N/A	RMQLKNAELMRCFEIKGIDIVDCKIQGNILNCDVFSSELVNSSLFESNLFGATDAADCKIEDSYVSKNVMCKDSYVFGPRGVFSGEMEGGIFRKGRATKMARFENTEIIEIEKI*