Scaffold Ga0099972_12452434

Overview

Basic Information

• Taxon OID: 3300006467
• Scaffold ID: Ga0099972_12452434
• Source Dataset Name: Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: JGI facility at Oak Ridge National Laboratory, Brown University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 810
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Coastal Sediment Microbial Communities From Rhode Island, Usa

Source Dataset Sampling Location

• Location Name: Rhode Island
• Coordinates
  • Lat. (^o): 40.435
  • Long. (^o): -70.483
  • Depth (m): 78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F035770	Metagenome	171	Y
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099972_124524342	F002399	GGAGG	MSNETRSKYKSIIGQLRKKYGLKDNTPIHKVEQIMTPEDWKAFSMALTFPNGKPTDRE*
Ga0099972_124524343	F035770	GGAG	MKPYKQITFGMAEFAYARHLRDELGHTGEIIYPNKDASKQDRDGVWLLLTITGERLGTVSPDGTVRTT*
Ga0099972_124524344	F087206	AGG	MSNIYNEQELEDIQIYVLEQDRKGLIEDEISYISFAYNLHPDDDRDEILEFITE