Scaffold Ga0099963_1074511

Overview

Basic Information

• Taxon OID: 3300006413
• Scaffold ID: Ga0099963_1074511
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1618
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004453	Metagenome	437	Y
F004764	Metagenome / Metatranscriptome	424	Y
F014388	Metagenome / Metatranscriptome	263	N
F049045	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099963_10745112	F014388	AGGAG	MSSLHHENILEDCFEVAMESFRINNKLTHEQLQELITISKGTYDAICNNAYKIFQNRCI*
Ga0099963_10745113	F004453	N/A	MLIDFTEFELETIANSMEDYINYDDEKLNTESLFGGLSVYDRVTSIQDKIDKVFNN*
Ga0099963_10745117	F004764	AGGAGG	MNFSLEQNVDILSAYHVERFTHLRDNKQYQDADAIAQEYICNGEVEDDNYQWLYVNYQFKEAN*
Ga0099963_10745118	F049045	N/A	NYVMTVSELKEYLSKFNDDEKITFYFLKNDTLTNCQLEDINSYGMGIEFTIQDTSELFEEAA*