Scaffold Ga0099656_135543

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099656_135543

Scaffold Ga0099656_135543

Overview

Basic Information
Taxon OID	3300006410 Open in IMG/M
Scaffold ID	Ga0099656_135543 Open in IMG/M
Source Dataset Name	Algae and Fungi communities from freshwater lake in Auvergne, France - collected at the beginning of algae bloom, incubated in lab for 4 day
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Institut Pasteur, Lille, France
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1590
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Algae And Fungi Communities From Freshwater Lake In Auvergne, France During And After Algae Bloom

Source Dataset Sampling Location
Location Name	Auvergne, France
Coordinates	Lat. (^o)	45.49	Long. (^o)	2.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F092089	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099656_1355432	F092089	AGG	VQLQWRPCLAHKISHISFRIFNRTQSPESFKTMKLLSSIGIVLALSISFAFAGKSTFKKFPGGLSKKNYVPRNIGKRILKGNSKKGSIVKKNKRKGARASTNTAPTIAQSYVNWVVCLHDRTSNKACSPQLGVPKGYYFLDPFVVYSSCSNTTIPVRKCNVAVDPKGEPLTVVIPVAPDVWNDYDDDPKGGICNESRPTGNDPVLLYPKTNVATDFFKYTQLPYAFVNGRSLSMEYIIEDEPFYLKSCSNKVQCCDDCDVPSCGDCGGVDAYPTIGYSATDTSRWKPGEKRYYQWGYGYEVDACDCSGCSMGRVELTAVEKK*

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