Scaffold Ga0075506_1678549

Overview

Basic Information

• Taxon OID: 3300006401
• Scaffold ID: Ga0075506_1678549
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_RNA1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2074
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075506_16785493	F006550	GGTGG	MAKIFNERKADYRGLQLWLNPVDKTVYATEGAPKYSFGEVNGYALYDFNKHFENQKLAKDSFGQNQYMHDAFVDTEFKALAEDYVSDMKAGGRQRTAALRSSTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELSYSRSTFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKIEQRQSFDVIAKADASLTAKAAIGVWDTFVSGADRSSNNPLLDLGIAKLLIEGSGVGGRLTRVGMHPLDFAKYMSNTFIRGVASTKPSEVSFESGTRDLPGFPDAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLAEIIQSETGRQLTGCSTPSDWT*