Scaffold Ga0075488_1397670

Overview

Basic Information

• Taxon OID: 3300006397
• Scaffold ID: Ga0075488_1397670
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_RNA2 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 681
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Cephalochordata → Leptocardii → Amphioxiformes → Branchiostomidae → Branchiostoma → Branchiostoma floridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010400	Metatranscriptome	304	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075488_13976701	F010400	GGA	MVCKALLVALIALSGYHFVWCQNNGPMPQLVGRWVEDESKRTGLNDFLWARGVNWFKRQYATALTTWKYEQTIIFRDGGYQVNGIKGPLKEVFSYKLTPDNRTVEMIDLGSDLGGLRATTVEVKGNALVSTLSVPETGEVDMIATRTIDPNNPNVMYYTTKDIPYNYAMVATMRRQ*