Scaffold Ga0079069_1414952

Overview

Basic Information

• Taxon OID: 3300006387
• Scaffold ID: Ga0079069_1414952
• Source Dataset Name: Active sludge microbial communities from Illinois, USA, of municipal wastewater-treating anaerobic digesters - ADurb_Oil_02_SludgeMetaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2566
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → Archaeoglobaceae → Archaeoglobus → Archaeoglobus sulfaticallidus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Illinois, USA
• Coordinates
  • Lat. (^o): 40.1191
  • Long. (^o): -88.1952

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080199	Metagenome / Metatranscriptome	115	N
F088950	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079069_14149522	F088950	N/A	MDIDGVLKELADFIEDKVPELDNKVTTIYPESKRFAPPTVVIDIVAGRETLIIDGTKTHELVRVAIISDKKSEINRIFKLITDAFLDYGRELTLCAYGGVSYISPVAPAFVEKNSAMKRELDIVVIEFRKRR*
Ga0079069_14149523	F080199	GGAG	MKIMVQGVEETNLKLSQILAAVQENVDNTLDLFSADMTKEIKDSAPYDTGRYMSSWFYERKESLKYAIISQNSYVPYNTVLVFGTEKFKPIANEPRYKYPDSDRGIIHDVRQIKFIYSIKLGQLIKRVNLLNANISLAGL*