Scaffold Ga0075021_10404438

Overview

Basic Information

• Taxon OID: 3300006354
• Scaffold ID: Ga0075021_10404438
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 857
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1289
  • Long. (^o): -78.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F006905	Metagenome / Metatranscriptome	362	Y
F045282	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075021_104044381	F006905	N/A	SNTMPPAAIPEAINALRAVLRDVPEEFPDRNREVNRFLAPLASAIHAIMKDQDIDIPFTSRVEHIATGGVAKYPDIVKISLDELAAEFEGTCS*
Ga0075021_104044382	F001698	AGGAG	MAGVINDIEALAEFRAHLMRFNHDLAENFATIQSHWRELGEVWRDDMYRLFGEALEEVTPGITQYLSATEGHEAHLAALIERLRGYFETGAGAGLGVSGGKPTRDGPRDGAA*
Ga0075021_104044383	F045282	GGA	VTSVHADIDALKGLHEALVRYRHAQREVAGRGEEEIKVVRASLEAKAGRWRAQLEQGQAEFGACQERAA