Scaffold Ga0099954_1035452

Overview

Basic Information

• Taxon OID: 3300006350
• Scaffold ID: Ga0099954_1035452
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 835
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011766	Metagenome	287	Y
F092221	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099954_10354521	F092221	GGTGG	MAFEIRDFGKSSNFDFSKKFKNFDNKPKEPSIYPRGSDGYQLESEVKFYNQDSLWTRWRRGYELYVMMQTILGSTSKERDRRGDYRLFFTFQQFPGVFIPARIFTFPSKNKELGEHVCGMRDTDGFSFYNFGLPILAVRYLAPSVDATYQQNGTTLVVTKTDH
Ga0099954_10354522	F011766	N/A	AITGAVSISLPTDFCFYLVNTGTVTNINQFFPLFVASVDSSQQSYSLSEQKILPFINHPTVQAGANFGSANNALAPKQRGLMLKRGQALYVAASGATALTNGFYCNVQGGFY*