Basic Information | |
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Taxon OID | 3300006345 Open in IMG/M |
Scaffold ID | Ga0099693_1230276 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5066 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 75 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002334 | Metagenome | 569 | N |
F099424 | Metagenome / Metatranscriptome | 103 | N |
F101341 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0099693_12302765 | F101341 | N/A | MKPKQLVWEKYPKFDMSPYKMVSQMEFPLSDDVVRQSIYRQKCQWTSVKKSLDLVDDEFDLVIRMRTDLEFHDRVPLEACKGNGLYMMNGSYQAGAGREYCDWFYCGPHKRVQEFDPLKVFDDFYADGIRHMHDLVIETLRSLQIPHSVLDLKAWMMDRSKIK* |
Ga0099693_12302767 | F002334 | GGA | MTLGVFHQVYTRPKATEEAIKSFRQFHPDTPYVLICDGGKSFHRIAKRYDCLYVHEEDNLGYRDHTHASGIYGMTKEEVLEWLRRFRLACTLCNTDHILMMEDDILIRGEIHVPEEWEFAGQAKPGNLLQEEFMTYLTEKYGVEWNVNYYGTGGGSIFNAKTFLENYERVIKIFDEEFDYIKENLCGNLGWVDVWMPMYYFLCGKQYRHNNLLTETTSNPIWTISKEPIVHQYKVHYE* |
Ga0099693_12302768 | F099424 | N/A | MSKITFGYIVGGEDKHYNNLLRSLESLERIEQPHEVVILDADSRLEADEDKPNVRIIPFPVDEAKGEGWFKPHYWQMRYHLNKYIETD |
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