Scaffold Ga0068493_10535134

Overview

Basic Information

• Taxon OID: 3300006341
• Scaffold ID: Ga0068493_10535134
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1264
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y
F061282	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068493_105351341	F061282	N/A	KKFGGIDVFAIDPTHFLKSRLGKKKYTRYSGYVGEDEAGEYIRAFARKYPKKPIIVMDSSTGCMQYLKHGS*
Ga0068493_105351342	F001334	N/A	MMKFKEYLQLNADDSIEQVMDGEWILKSRTTWKATDDEDNKLEIHNDGHDPELNGESWSVHTNTFAPKAFAFFCKQFIKEAKPSEVTHARSRIYP*
Ga0068493_105351343	F003285	GAGG	MPDQESIHNLQTEIQTLKIKDEFRTKELDALMKKLSETSSKLNALSENIGRLLAGQDLHKTSDNEVRDELKLLHSRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLERWRWITIGIATAIAWLLTNIIPKFLSN*