Scaffold Ga0068493_10441342

Overview

Basic Information

• Taxon OID: 3300006341
• Scaffold ID: Ga0068493_10441342
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1919
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005608	Metagenome / Metatranscriptome	395	Y
F014511	Metagenome / Metatranscriptome	262	Y
F015491	Metagenome	254	Y
F022429	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068493_104413422	F022429	GAG	MSSITSFTELWNGPSFLNRKPSALRMTARDEAGKKKREKSGKLKAGEHFAKNWDKDLWD*
Ga0068493_104413424	F005608	GGAG	MKKATIEVLEEGELIFGSPTAGKYFVRRYEDETEMGGGFFKTKKEAVTHVREYKKSK*
Ga0068493_104413425	F015491	GAG	MKKTKRQRRMKVPARPQVTPRKWSKKTSRIFDKQFDRFLYDELYVPTKKAWGENDIVKYERNMYGDSK*
Ga0068493_104413426	F014511	AGGA	MGMKNVTVITVVDEKFRFTAMDLNGSVFVFEDKPSIPLDIACDTWDVKTGEVLQISPPTPKSTSSLDLGDWRESLIELNDEVILD*