Scaffold Ga0068493_10233930

Overview

Basic Information

• Taxon OID: 3300006341
• Scaffold ID: Ga0068493_10233930
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4379
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009987	Metagenome / Metatranscriptome	310	Y
F010942	Metagenome / Metatranscriptome	297	Y
F012162	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068493_102339303	F012162	AGGGGG	MLLTEEQTKYYLNDMIKHYREKESNTVGVLSWQRSEAEYRRKTFEDMRIVLFGDDNNENQRTTNT*
Ga0068493_102339306	F010942	GAGG	MPDQSRESEKQILTLTKDVEHLQYIIDELEKECEFVKKHFTTKNSERLDEIKTIHGRIDQHLQTDLDFHENVRKKISEKFETFDERIRQLDRWKWATWGALIVIGALCGYYVPATLPFK*
Ga0068493_102339308	F009987	N/A	RIMIGAIIGNALGLGLKIMDKMDRNSDKDSFTEFKARKKEMDNTLADADVEGIDSMFEYLADRARAGKTGRKELK*