Scaffold Ga0068503_10426892

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10426892
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2503
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000563	Metagenome	1022	Y
F000937	Metagenome	828	Y
F015531	Metagenome	254	N
F034711	Metagenome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_104268921	F000937	N/A	MVKEIVLIILLFNGELSLPSFPFEGTIHECFMYGDKLRIEHATYNEERNAWFLK
Ga0068503_104268923	F000563	GAGG	MKYKFQITEDGKKEEKEAMSFKKLLKSLVTPNPKWTGFISYENKKGRYVTHSILKGKKI*
Ga0068503_104268924	F015531	GGA	MKKLEAMKKDKEIKAMYKIYKVAFKGKDSFNLYVKNLSEFFRITMDIYISGYTGVPKGCGKGPKGNGEWGRADAIQYWSEKCNIKYKDINKYFYSVDEVSAYS*
Ga0068503_104268926	F034711	N/A	MKLDKDIVKNKKKYSSFHTYDNAYGPGFGFRWKEIPAAQTNLVHKRVTSDKTWTKLVQGYSNLGITYRGHYTP*