Scaffold Ga0068503

Basic Information
Taxon OID	3300006340 Open in IMG/M
Scaffold ID	Ga0068503_10351922 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006340 Open in IMG/M

Scaffold ID

Ga0068503_10351922 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3967
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3967

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	770
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

770

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001930	Metagenome	615	Y
F023622	Metagenome / Metatranscriptome	209	Y
F072442	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_1035192211	F000245	AGAAGG	MKTFAEAKKGWEKLRNKRDAKYDKYVSDEIKKRKLAKHPVNATDDIKMRMKPNKPAFKFPTPNGSMMIHVYLRKMAPSKGQPKGMMAYNYQLEDK*
Ga0068503_103519224	F023622	GAGG	MKTFREFRGNTPTQLVEQVYFKVSIPDMSTMFMKATSESAVKLDMRKKLKPDVVKEVTIERVTKAEMRKIYRAMGQGKEDEKEKEPAEEK*
Ga0068503_103519227	F072442	AGAAG	MKNTQEFFQLGVTKPSKSDVQNYLNGLGTRLMQLSDIKKKIIKHFKNIKNLKLDSFGRKVLSFEEYIPEENTKRDIKKNK*
Ga0068503_103519228	F001930	N/A	MKRFKQYLKEGVAWELSASKMIFDFQNVPDMKIPFTSKTMEWIFKVQLPRATVFHVTSVDGFKKLKKLQNKRKSISAFFNMDASTMESGIQGGGGVVAEMDANIILSSKHDVLSMPDKTGRRWVELMNIDKNKTMHKELEQMLIDIAIKHDPKTKELIKIEPDIGLGAWWHLRMNFKDDGKKMSLIIADYIDGVNAILKKHKKEIQGAVHGYYVRRGTIAVKHPSGRMVGGDSEMSEWNAYDEQVVDKIKIEKVHTFYSQSHADRPKKEIVPQLGKIPHKHWNNARDLSTYISQVAEAEIRSMGRSKG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068503_10351922

Overview

Ecosystem & Geography

Associated Families

Sequences