Scaffold Ga0068503_10242328

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10242328
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3450
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002453	Metagenome / Metatranscriptome	558	Y
F004868	Metagenome / Metatranscriptome	420	Y
F047901	Metagenome / Metatranscriptome	149	Y
F076479	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_1024232810	F047901	AGAAG	MIQLLKRFIRTIYSYIKRDVSIDIRSQDDLLLLMKYYRIRAIVRGRLYIETIEAKDLDSACKILVKKAADGLLKIKEDVGFYQRKQVQITYEEVKDGTTTISANEVRPGTQVGKESFDITT*
Ga0068503_102423283	F004868	AGAAG	MKFVIILLLSVTGVEEIKLGIKGSSCETIAESWREINTTYYEGPNQGNFTNDGRLMIGYICE*
Ga0068503_102423288	F002453	AGGA	MAPIEYPILYDSWYECSRAAHQKSISVMSKIGYKNVNDYQVGTKYHCKAVATY*
Ga0068503_102423289	F076479	GAG	MTFTAFILFGHICLAVPGDLDKCWNIYHTPQIRYSSERTCMKAAKAYVDGAQRYYKRQKLSMSELELYCIGVNPIEAL*