Scaffold Ga0068503_10213880

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10213880
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2599
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007317	Metagenome	353	Y
F043455	Metagenome	156	Y
F049212	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_102138801	F049212	N/A	MIQSQQLKNKIKQQGEIAHGQNDAYNDRKEREALRYFLYWNKDFQQLWAEYFGTPTNSYLLEDPLGEFGVDLGIVDGENIYGLIEVDVFNSWGESYPAHYKKFHVLERKLKYFEGTDYKYLTCTFNNTHTQMCCTTRENIERCHFLYGITNMWMPKIEAYDT
Ga0068503_102138804	F043455	N/A	MKQMNMNMRKETVESYLRRGGTVTKIPHVLDTVGSIWNQQGYEDKKPDEIRVVSWKSIQPDERFDSEDDDRKYWNKLNKRCDKLLKKIKKD*
Ga0068503_102138806	F007317	N/A	MKQKKIVKEVKENGNGEFYLEFSSKELAMFGLEKGDSVEWLQLEDREVWKKLTKKKWSI*