Scaffold Ga0068481_1501501

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1501501
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5700
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007004	Metagenome / Metatranscriptome	360	Y
F007121	Metagenome / Metatranscriptome	357	Y
F010942	Metagenome / Metatranscriptome	297	Y
F012162	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_150150111	F012162	AGGGGG	MLLTEEQTKYYLNDMIKHYREKEDNATNFSWNRSEAEYRRKTFEDMRIVLFGDDDNGNQRTEIT*
Ga0068481_15015012	F007121	N/A	MLKTILLTVLLLFGFTTPATGGWQIVLQDGLQEPTLDKLIDWVPEEVPRTVSFYFVTDADGQFDIKIAYSLIEAYACKQNCVRGIVDNGDHWILPAPGVNYYVIKRWIVYRYVDDEDWRGIDKTQQWIYKYPYNDDWLREKFYPLWPDMK*
Ga0068481_15015017	F007004	AGGA	MKNLMIGLSLMLFIGCASSNAYERPTVRIVGEAQMKKLDNGNYEVTPRWIKDRFDAENSMIKQLEDCREAR*
Ga0068481_15015018	F010942	GAGG	MPDQSRESEKQILTVQKDIEHLKYVIDELEKECEFVKKHFTTKNSERLDDVKTIHGRIDQHLQTDLEFHENVRKKISEKFDTLDERIRQLDKWKWATWGALMMVGALVGYFFPISLK*