Scaffold Ga0068481_1356383

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1356383
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6124
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006364	Metagenome / Metatranscriptome	375	Y
F007608	Metagenome / Metatranscriptome	348	Y
F012070	Metagenome	284	Y
F017906	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_13563832	F017906	N/A	LSAHINSNIMDTCEIKGGEKGQFDIFRNGELFLSKEDMGRFPTKEDVDDIIKEIKSFPE*
Ga0068481_13563834	F007608	AGGA	MSQENKYEKLPNSMYPKVRQQVVDRITTFEKVIEDHVTAQKEALKVIYEQLEEAKNDLKYLDEVN*
Ga0068481_13563835	F006364	AGGAG	MELDNDTRKMRIINYLDYMDDKSLQEIAAALYNLSVRRQEVKNRKEMVDESGK*
Ga0068481_13563838	F012070	AGGAG	MPIEIKIKEEANESYDDYILYEILCDYCDEEYTIKYIMNKRPKQSIECCPFCSSLIEEPVEIIDEEETGWD*