Scaffold Ga0068481_1201086

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1201086
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3383
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F005685	Metagenome / Metatranscriptome	393	Y
F011337	Metagenome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_12010861	F011337	AGAAG	MKTFKQYIVEIGVNPFKIVGKPAWTESLSTMLFDLPRAGIKDIKIPLSPAIMRRIWPKPVRTTVFHLTDYDGLGKLKKMQGGKRSISAFFNIDDIIIQTGIKSEGGYIAEMDADILVASQDDISSQPDKTGRRWVTLSSLMNKPTDPDPGLGGGAKLKSMEKDISGMLVDIVTKHSDITPLPNINKAWGYLGKSVGGKEKSLIIKDYIDGMEKIMKKNSKILGTLLTDYTKKRIQEPDPDSGDKPMWDELVVNNFKIKKVHIGQEFGEDFQDDDDI
Ga0068481_12010862	F001930	AGGA	MKRFKQYLKEGVAWELSASKMIFDFQNVPDMKIPFTSKTMEWIFKVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMTADYIDSGIKTEGGVVAELDANIIISSKSDIMSQPDKTGRRWVALYNIDPQYKMEKEMTQMLIDLAVKHDPRNKEYLKTSPEIGVGVWWKLQSDLQTNFAKDKAGKKMALIIADYIDGVNVILNKHKKEIQGAVHGYYVRRGTIAVKHASGRMVGGDSEISEWNAWDEQVVDKIKIEKVHTYNTARRAGDWVKTDIIPNLGKIPHKHWKSTKELSTYISQVADAEVRVLRRSKG*
Ga0068481_12010864	F005685	GAGG	MKKFNEYFSFEDKILGTLKRGPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKRTKKN*