Scaffold Ga0068481_1064404

Overview

Basic Information

• Taxon OID: 3300006339
• Scaffold ID: Ga0068481_1064404
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11198
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F002745	Metagenome	533	Y
F006364	Metagenome / Metatranscriptome	375	Y
F007608	Metagenome / Metatranscriptome	348	Y
F012070	Metagenome	284	Y
F012510	Metagenome	280	Y
F034603	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068481_106440411	F002745	AGGA	MKTFKSYLTEFAQLSTSDYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRATVFHTTDLRGLPKLKKLEGGKKTISAFFSMMSRYMESGIATEGGIVVEMDADVLISAKDDIMSMVDKTGRRWVEMSWFQNANLIGPGFGKVEKELNTLIANLVVKHLPKDVTQGEHEYELWSDMKRHLHGDGKKLRLVIKDYFDGVEKVIKKNKEVLGNIFYGYARSKRMTDNAWDEQIVNNIKIKKVHVIKPHPTKDVWGEDEIKQHITDVHNWPIKAWDASIELEIYTRAVVAKEKGK*
Ga0068481_106440413	F012510	AGG	MKTFKSFYDWGKTFKEHLNEVYKDYPGKGWVHGTKDAPKINPKDIVWRSKVHHWDNTVRSDDTRMIITNTGKGKDKFQMWAVSDKSGDVVFHFGDKPTLDDAKEFASIRKWQEKK*
Ga0068481_106440414	F001930	GGA	MKSFKGYITEEVAWLQSTSKMIFDFDVVPNMKIPLTSKTMSWIFNVQLPRVTVFHVTSGIGFEKLIRLQNKKKSISAFFNMTADYIDQGIKTEGGVVVELDANILMSSKSDILSMPDKTGRRWVELHNIDPKYKLEKELTQMLIDLAIKHDPRNKEYLKTAPEIGMGVWWKLQTDLLTKFDPAKAGKKMSLIIADYMDGVNTILKKHKKDIQGAIHGYIVRRGTVAVKHPSGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTFNTARREADWVKTNIIPILGKIPHKHWKSAAELSTYISQVADAEVRTFGGWARKK*
Ga0068481_106440415	F034603	GGA	MKSFKGYLKNSQAQLLPEAAPKWTESLSTMLFDLPRAGLKDVLLPLSPSILKRIWPKPPRTTVFHLTDYAGIKKLKKLQGSKKSISSFFNITARAIDDGVATSGGYAVELIGDILAAAPDDISTQPDKTGRRWITLSTLLNPIDFSHLGNGIGGSKTLKGMENDINEMMIEIIMQYADDPQYMPDTNKSWIALRQEYLNEKKILSLIIKDYIDGMEKIMKKYSAKLKSVLLDYVKKRASEPDPDSGDVPEWDEIVVNNIKIVKIHVGWEFAEDFEGDDDIEGFPFETYPDSGDLVDYITRTVQRIKL*
Ga0068481_10644042	F007608	AGGAG	MSQENKYEKLPNSMYPRVRQQVVDRIATFEKVIEEHAIAQKEALKIIYEQLEEAQNDLKYLDEVN*
Ga0068481_10644043	F006364	AGGAG	LIEREIDNDTRKMRILNYLDYMDDKSLREISVALYNLSKRRQEISNKKELVNESGK*
Ga0068481_10644046	F012070	GGA	MPIKIKLIEAASESYDDYILYEILCDYCDEEYTIKYMINDRPKQSIECCPFCSNLIEEPAESIIDDEETSWD*