Scaffold Ga0068482_1264546

Overview

Basic Information

• Taxon OID: 3300006338
• Scaffold ID: Ga0068482_1264546
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5745
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010876	Metagenome / Metatranscriptome	298	Y
F021856	Metagenome / Metatranscriptome	217	Y
F021857	Metagenome / Metatranscriptome	217	Y
F023623	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068482_12645461	F021857	GGAGG	MTIIDKKEVKIRVRSRFCAICDSQFRWQCNCPNNKVMAKQVNRSFQAGKRYRGKRALEYCHN
Ga0068482_126454610	F023623	N/A	KIDFDTGKVYYPDNNEELKESLEEMKIKESMGIKTGVEREALFQKTRHYGLPYGRLKYLFYCFLLMMDGLIGIVSFGQTQSILAQKYLLSKWILCEGEEHGDR*
Ga0068482_12645466	F021856	N/A	MTEKKLIKLFKKSADKLAKKSKNNSTAIHTMGGLGEIEHQRMCPFRSIPFEDCPLCILDSLDKL*
Ga0068482_12645469	F010876	AGGAG	MEIDKTAIGFNSSPLYRFILQEGKFKGVEFYFKNVELDHKHTPGSFDIVFGYEIIGGNYRDHGYPPDKEHMNCAITEKNKDQFQVEIGKILKNLLILNDPRVILHKGKSL*