Scaffold Ga0068482_1258439

Overview

Basic Information

• Taxon OID: 3300006338
• Scaffold ID: Ga0068482_1258439
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5811
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F008341	Metagenome / Metatranscriptome	335	Y
F015662	Metagenome / Metatranscriptome	253	Y
F059074	Metagenome	134	N
F105490	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068482_12584391	F105490	GAGG	MKGRTGKRLRQEGAIKRIELTIERYEEILPAEKEQLKLMRKEKDLPPNNIPTMENKIKQFEKKLESAKVCLKNTKSNLNK*
Ga0068482_125843910	F002348	GGA	MKPNEKWMKYGGWILSLLTILIGVSFIWPHFHVALLGFALIYLGVRIFNFSTFEEYREKRIKLLHKLMD*
Ga0068482_125843914	F059074	GAG	MEIDLSLNRSLEELISSYFEAYEAGMGCDSFLSVNTNATAADVSCYYALEDYLSGMGAL*
Ga0068482_12584395	F008341	AGG	MSETLQKIVVETMIPANFKFMARDLDGSVHVFENEPNLDYGTNKNPLPCDMWDDPSGGNTRPVSFKTDTAAGDFIEELGDWRDSCIEITEDN*
Ga0068482_12584396	F015662	GAG	MGIMKKQLIEKLIEDEISSEESARVELEVDLARERARERRQMDMYDDPYLNWSGHR*