Basic Information | |
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Taxon OID | 3300006336 Open in IMG/M |
Scaffold ID | Ga0068502_1155115 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5957 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (88.46%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013700 | Metagenome | 269 | Y |
F026709 | Metagenome | 197 | N |
F058216 | Metagenome | 135 | Y |
F080517 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0068502_11551152 | F013700 | GAGG | MDFKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMASGGMVRQEFLRRIAQIGYDELKFNDIANKLEEDVDENNSHLASKYYEPPETNEEDDEV*GVREA* |
Ga0068502_115511524 | F080517 | AGGAG | MTIGYDTVNKCITVVRTPENTSYETMFKIAIEKLIKGQEIDKYKNALINLAKGLDKDEV* |
Ga0068502_11551155 | F058216 | AGGAGG | MNKTIGQLIKEDHWSTRRLAVAINITNKDLKGVKWEKSNKPYKKSKKKSYLW* |
Ga0068502_11551157 | F026709 | GGA | MYCILIKDKDNGRYRIYTNEIFTTEKETLDYVKRSKFKKDVKWKVEEFDMKYFKS* |
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