Scaffold Ga0068502_1155115

Overview

Basic Information

• Taxon OID: 3300006336
• Scaffold ID: Ga0068502_1155115
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5957
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F026709	Metagenome	197	N
F058216	Metagenome	135	Y
F080517	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068502_11551152	F013700	GAGG	MDFKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMASGGMVRQEFLRRIAQIGYDELKFNDIANKLEEDVDENNSHLASKYYEPPETNEEDDEV*GVREA*
Ga0068502_115511524	F080517	AGGAG	MTIGYDTVNKCITVVRTPENTSYETMFKIAIEKLIKGQEIDKYKNALINLAKGLDKDEV*
Ga0068502_11551155	F058216	AGGAGG	MNKTIGQLIKEDHWSTRRLAVAINITNKDLKGVKWEKSNKPYKKSKKKSYLW*
Ga0068502_11551157	F026709	GGA	MYCILIKDKDNGRYRIYTNEIFTTEKETLDYVKRSKFKKDVKWKVEEFDMKYFKS*