Scaffold Ga0099675_1021461

Overview

Basic Information

• Taxon OID: 3300006334
• Scaffold ID: Ga0099675_1021461
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9064
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004869	Metagenome / Metatranscriptome	420	Y
F047729	Metagenome / Metatranscriptome	149	Y
F049045	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099675_102146111	F049045	GGAGG	MTVAELVEKLLDFDGSDEVTFYYLKDNILTNSRLEDINSYGMGIEFTIQDTHEFLEENSCQN*
Ga0099675_102146121	F004869	GGAG	MSYDTEHYYALHTFLEDDELHEIWNIVERAMNREGYDVSNSELSMRLYDSELEENIEHDMENLLGSLSEGKDFDYGSKVDALVDSMGVTENKVAQGHVRKDLDRL*
Ga0099675_10214615	F047729	N/A	MSTSELNKLKNAQYHLDELEKMISGNNWYSHLYQHIAAVEGELQRQVAILENLPKAKTEDTKDTEKLYDVLENQTTGYYPPDASYTRLSRVGAAQKHEELLASGVSPNDIKIVRVK*