Scaffold Ga0068488_1279983

Overview

Basic Information

• Taxon OID: 3300006331
• Scaffold ID: Ga0068488_1279983
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1229
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014792	Metagenome	260	Y
F033079	Metagenome	178	Y
F101872	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068488_12799831	F033079	AGCAG	MIKEDEPVEIAGNRLVWRHIQRENQRMILDPLGYDAIKDIDEIHSRNRRKSDDPYLKATSEKIAHHFPKINV
Ga0068488_12799833	F101872	AGGA	METIKQIIQDIKVSNSLQGQANIGSQCNNFRLSEEDIRILTFASKPIKEDVKHEELQFDQNVFKKPSIYETLG*
Ga0068488_12799836	F014792	N/A	MNNERENYSWGIIQDMIEREINSAFKLREPTKMPSKKEIKQIIKSTVKKERK*