Scaffold Ga0068488_1146929

Overview

Basic Information

• Taxon OID: 3300006331
• Scaffold ID: Ga0068488_1146929
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2078
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015350	Metagenome	255	Y
F039182	Metagenome	164	Y
F054945	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068488_11469293	F039182	N/A	MKWMYIIIMVVALGLNGCADTADAEDSTATTPAEQQQEADKEVSDDETWIAVVMTWNPVKRVIDKEFASEVECWNFYEGGTGESRFGEQHRDHQGNLPTKDSHFGPDYLEYPIRTYRGKDGQGSVWLTCDTKGRYKDL*
Ga0068488_11469294	F015350	N/A	MKKIYKWLIIIVVAILVGWQYDAALQKNLHEVEIRIKKFESVDLFNILEQISLAHIESIESVDILNKKQMEVQALEKEIKEKFTIQERELRAQVKTIETKLQKLRSELNDGLTKIERDVSTIDSVVDEKFKTLWMMINNK*
Ga0068488_11469296	F054945	GAGG	MKWVILIYLAMWTNTPEVMKYTVLEFPAYDYYDCIDIAEEINNIETAYNSETAYVRSFYWVYNNMLDEIKAECVYADPVAPVPKWLENKKRNWNKPPDPPMIPE*