Scaffold Ga0068483_1252868

Overview

Basic Information

• Taxon OID: 3300006330
• Scaffold ID: Ga0068483_1252868
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2277
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034336	Metagenome / Metatranscriptome	175	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068483_12528682	F034336	AGGAG	MKINVKVLSAFLLIVNLYAVENPEDVKPTIQNGKGLFVLLDDTSWICQIVGEAYILGTIDGIITRKRPLRALCGNKVDKALLTIPNGIEIERIISIVHQFLKDNPENLYKRSIALIRQSLLRAFDQYDIAGY*