Scaffold Ga0068483_1211289

Overview

Basic Information

• Taxon OID: 3300006330
• Scaffold ID: Ga0068483_1211289
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1879
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F007771	Metagenome / Metatranscriptome	345	Y
F010791	Metagenome / Metatranscriptome	299	N
F026902	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068483_12112891	F010791	GAG	MSFEFRAGRKRVVKSVETAEEANKLMRRMIAIRNENFLWENINVKTGHLRAVDELEKLVGAIFDVFDTMSIYVNGKSVRRIWSRGF*
Ga0068483_12112892	F007771	GAGG	METIIHAKNIDKKVRLALYGMLHHSATKLFPRRMKYVSIKLHLKHYVFDGVAMIEEDTKITNPRNFKIIIDPYRLEKDDWGRERNYSEWVSELLRALAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSGDDYYRSPHEVEAYGLEKWLQLGYTATWNKIEEKNG*
Ga0068483_12112893	F026902	N/A	MDRYRIEYAEKGIPGILCKYVTGTEELLSVLLKLKYFDKLESFDNVKVCRN*
Ga0068483_12112894	F000615	GAG	MCRLRLFYECSDGKMGFAEHVMRYEDDIASFIKHWKTGGRMVITEHIDLV*
Ga0068483_12112895	F001048	N/A	MKIKSTKQFWWRFNHLKRNGGEITVTDRTSEMDVNAFNKISLAVNRRVRWELGSEGFAIWNACGYKDIPTLAKAYRIS*