Scaffold Ga0068499_1042054

Overview

Basic Information

• Taxon OID: 3300006327
• Scaffold ID: Ga0068499_1042054
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0125m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10831
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010273	Metagenome / Metatranscriptome	306	Y
F076175	Metagenome	118	N
F103402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068499_10420542	F103402	N/A	MANTYNWSRLEPLVKDEDNLDNVVVKLVCGMTASDGNGNSAYIDTMHTLAAPDPSAFIPFADLTQEWAIEIADAVAESDGFKDTLDQQIEAAKLRPSPKPFSWQQPAPEPSE*
Ga0068499_10420544	F010273	N/A	MKEKLKSRKLWMAIGGLLTVMATEWFNLSPEVTENLIGAVMVIVPAYIGGQGLVDCFKEYAAKK*
Ga0068499_10420545	F076175	AGGAG	MILEALKGLAALPKLVEAVERIGDKLDDKAALERLGDKRNRNRAAIDGVLESSSGQRGEDDSSPAVSGGDTGGS*