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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006325 Open in IMG/M |
| Scaffold ID | Ga0068501_1093763 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hawaii |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5470 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (73.68%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013700 | Metagenome | 269 | Y |
| F023368 | Metagenome / Metatranscriptome | 210 | Y |
| F040683 | Metagenome | 161 | Y |
| F061266 | Metagenome / Metatranscriptome | 132 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068501_109376314 | F061266 | AGGAGG | MFGTKKEEEQKLKRFMVMCKGKRSSTFYHEKSFFTLADADAYANLIRRQEDESGNEFYLFEQSKHYGNGEDKK* |
| Ga0068501_109376318 | F023368 | AGGAGG | MHKYSKETTKYKDISNEDKVFTSLDKYDSNETENLGMWLAHLSMPQMCASWVSEDTFNSLLERYKIDITSYVKDDERITTSIKDEVRSELFYLINKDKYKKRNLIKALRNKFPDVNSGVICRMIKKYLSLRVLEIDRTYKTKPFVIKGKYYTN* |
| Ga0068501_10937634 | F013700 | GAG | MDFKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMASGDMVRGEFLRRIAQIGYDELKFNDIADTLENDVDENNSHLASKNYEPPETNEEDE* |
| Ga0068501_10937639 | F040683 | AGGA | MKKYRVWGYETQGYYIDLDANNKQDAHDKALDVNRDDWIEGNDGESTCFDINKKDMERIDK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |