Scaffold Ga0068472_10331427

Overview

Basic Information

• Taxon OID: 3300006313
• Scaffold ID: Ga0068472_10331427
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1067
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038275	Metagenome / Metatranscriptome	166	N
F049042	Metagenome / Metatranscriptome	147	Y
F080148	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068472_103314271	F049042	AGGA	MAEFQALQTATAEWKPHQIAKAGDIASMVKAAGDLAEVVKETLSLASAGMEVVKLLAQLQNINPLLLALDALADEVLIAIQNIKEAGFWYLYVDPYFIKNVAAEPAFTYGFEQLRNPAGDRLWLAKDTQPPPLGTGEYKQVTQTPTQAQLDSQEVIPHLAT
Ga0068472_103314272	F038275	N/A	MPETNMKFIMEEQRSINMAHPTGKWAEAEIRRDDIKDLMNKTLKLATMYSDLLAIKREGWENVLRAQLKKDAKEKEKQNG*
Ga0068472_103314273	F080148	N/A	SFASDNTHGKWVTFSTACGTLVTNLDNRIAEIDARIGVPVYANSTHASGVTPAARSKPPCIRVKTIPTANATNGYVPYGREIYDNVNLMLGQDTDLLGGVIKDIESLGDLVQLVKNARNKYEIYNGRAKEY*