Scaffold Ga0068478_1147248

Overview

Basic Information

• Taxon OID: 3300006311
• Scaffold ID: Ga0068478_1147248
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3268
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011446	Metagenome / Metatranscriptome	291	Y
F021857	Metagenome / Metatranscriptome	217	Y
F025588	Metagenome / Metatranscriptome	201	N
F035477	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068478_11472482	F011446	AGGAG	MENVIFTWASTQSWWGLATTIIVIANGITMTLRDKYAENIPVLGKIWPILNWLSLNIANNKNDEK*
Ga0068478_11472483	F025588	N/A	MKKYTQFKKELTEDGMLHGEPGDENPSTQLYYSPNDPEIVKTASNTMTVPKYRLSEDGKGCNHTCAHWRDSSYCAEYYFKCDSTYTCDSWKDSGI*
Ga0068478_11472485	F035477	GGAG	MQNFKYFTEAKMARQHFQLIADIIAKLDISTVIKKEVASAFADGLEDTNPMFKRDAFMKATKMKNKGIPTAKDK*
Ga0068478_11472486	F021857	GGAGG	MTIIDKKEIKIRVRSRFCAICDSKFRWQCTCPNNKVLADQVNKSFHAGKRYRGKRALEYCYETEKKDAEL*