Scaffold Ga0068471_1626286

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1626286
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1939
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F058216	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_16262861	F058216	N/A	KQMHKTIGQLIKEDHWSTRRLAVAMNITQADLKGVKWEKLNKPYKKLKKKSYLW*
Ga0068471_16262865	F013700	GAGG	MDFKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGEHMASGGMVRQEFLRRIAQIGYDELKFNDIADTLENDVDENNSHLVSKYYEPSETNEEDE*