Basic Information | |
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Taxon OID | 3300006310 Open in IMG/M |
Scaffold ID | Ga0068471_1211019 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2558 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004418 | Metagenome / Metatranscriptome | 439 | Y |
F024128 | Metagenome | 207 | Y |
F027651 | Metagenome / Metatranscriptome | 194 | Y |
F076483 | Metagenome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0068471_12110191 | F076483 | GGAG | MQMIKTNTLSQIFKEHNIEVDRISKIRTLQTLLNDTTLDIPLMRRLVTTVNCHWILRNVLVNNAEHINVNRII |
Ga0068471_12110194 | F024128 | N/A | MVMITKKDAKEYLNKKYTERGNASLSDNLKYINDTVSHLEINRFQGVGDIMYQVVAKALTINVVTGKKAFVVWAVQENKDMETAVQKAKDELRNRIVMGAPVLQFAGPEQDVRNLVEYK* |
Ga0068471_12110195 | F027651 | N/A | MKKVNLNKIVESNIKWEAVGLANSLNQNYHNWLDCVTDTKDYNIESDKFGNGFGVFSGSKYWRIEASQNSGCNYIIDQKNSKMYSTAHKEKHVWGYVVKKNTENHNRGDILTRNFKVVGNVLTGNKVNLGMPNSHYPNYTVCWAHNDTWA* |
Ga0068471_12110196 | F004418 | N/A | MKIRNNKILNWLKDDWKNNRFRLICESIGSLCFIGIYVLMAWYGDSVSIATIFGIQIVGSTLHIINAYLRNSINLMVLNIIVIIIALFGIAKMYL* |
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