Scaffold Ga0068471_1211019

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1211019
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2558
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F024128	Metagenome	207	Y
F027651	Metagenome / Metatranscriptome	194	Y
F076483	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_12110191	F076483	GGAG	MQMIKTNTLSQIFKEHNIEVDRISKIRTLQTLLNDTTLDIPLMRRLVTTVNCHWILRNVLVNNAEHINVNRII
Ga0068471_12110194	F024128	N/A	MVMITKKDAKEYLNKKYTERGNASLSDNLKYINDTVSHLEINRFQGVGDIMYQVVAKALTINVVTGKKAFVVWAVQENKDMETAVQKAKDELRNRIVMGAPVLQFAGPEQDVRNLVEYK*
Ga0068471_12110195	F027651	N/A	MKKVNLNKIVESNIKWEAVGLANSLNQNYHNWLDCVTDTKDYNIESDKFGNGFGVFSGSKYWRIEASQNSGCNYIIDQKNSKMYSTAHKEKHVWGYVVKKNTENHNRGDILTRNFKVVGNVLTGNKVNLGMPNSHYPNYTVCWAHNDTWA*
Ga0068471_12110196	F004418	N/A	MKIRNNKILNWLKDDWKNNRFRLICESIGSLCFIGIYVLMAWYGDSVSIATIFGIQIVGSTLHIINAYLRNSINLMVLNIIVIIIALFGIAKMYL*