Scaffold Ga0068471

Basic Information
Taxon OID	3300006310 Open in IMG/M
Scaffold ID	Ga0068471_1202824 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006310 Open in IMG/M

Scaffold ID

Ga0068471_1202824 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3328
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3328

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (84.62%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F002874	Metagenome / Metatranscriptome	524	Y
F012919	Metagenome	276	Y
F018265	Metagenome / Metatranscriptome	236	Y
F018553	Metagenome / Metatranscriptome	234	Y
F022974	Metagenome / Metatranscriptome	212	Y
F030563	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_120282412	F018265	GAG	MSMEIHTLRAVKLTQNIFAINRVNRELVVVRKIVEDLEQRKMELLSS*
Ga0068471_120282413	F018553	AGG	MLCSYRMRIAILNEEILMWEDRLRDNPDHIPYLGYIRTTMKDRVKELEKLEQEENI
Ga0068471_12028242	F030563	GAG	MESIGLAVRMSYPTTRICSGCLNVFNRAECDIDISDFWNLPEELAWACSTKCANDAKDNWLKPKNKMQNNAELS*
Ga0068471_12028244	F002874	GAG	MEIDLSLNRSLEELESSYWEFIEATEGEDSSGWSKSVQEDISALEGYLMKMEVL*
Ga0068471_12028246	F012919	GAG	MNISREKLNLEVVKYLKNGGKITKLPDGPDYRFQPYGVRVAPGDPKVDLTITDTPTTKQQISYVEKNAL*
Ga0068471_12028248	F000615	N/A	VKRNQNNIVSGLERPENIMCRIRLFFECSDGSMGFAEHVMRYEDDIVGFIKHWKTGGRMVITEHIDLV*
Ga0068471_12028249	F022974	GAG	MEKNETYFVARLIKKGEFLSSDIFETLEAARLWAMKETKLLVSDSFLRKCKADDVVVEIDEHFFGYEISSEELLKNSTRVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068471_1202824

Overview

Ecosystem & Geography

Associated Families

Sequences