Scaffold Ga0068469_1198500

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068469_1198500

Scaffold Ga0068469_1198500

Overview

Basic Information
Taxon OID	3300006306 Open in IMG/M
Scaffold ID	Ga0068469_1198500 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	668
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001494	Metagenome	683	Y
F028834	Metagenome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068469_11985001	F028834	N/A	MIKVDIRSENSAYITICKWVIYIDISTGEQIIDSWEE*NT
Ga0068469_11985002	F001494	AGG	MKKTKTDPVKDFQKQAVDQRVCLFYVADRVKSILEDNKNNNDKMRSDLEEFNDECIHNIGVNALIEKYEY*

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