Scaffold Ga0068468_1020186

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1020186
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2362
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038722	Metagenome	165	N
F039181	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_10201862	F038722	AGGAGG	VNITESRDEAFEAIAEMLRSNVKKTKIVFKLAADYCVSDKTVYKWITRVEEMYDIEPIESILQQQKSELKSEIYQDLIRDYHKAKTDKDDDLRRKIGAILNNTYLKKINFN*
Ga0068468_10201865	F039181	GGAG	MPKGKYYEYQIKRSALDQDYLSGNIDDFQYARESLDLDLEYETYILAQTINSEVAKKQHRGQDA*