Scaffold Ga0068468_1000592

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1000592
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49952
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (43.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021559	Metagenome / Metatranscriptome	218	Y
F024573	Metagenome / Metatranscriptome	205	Y
F030784	Metagenome / Metatranscriptome	184	Y
F049704	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_100059213	F030784	AGGAGG	MFNTYIEDKAMIPVLLGYDWMVSHGTWTDCPYETYVFLKKKVIHNGNAVPLE*
Ga0068468_100059216	F021559	GGAG	MTNHAPIDQPIVEILNAYNPLEIKDILLHGSWRKAIHHKEWDKVLAYYKDNIDYMHHYLLDSPDAWNHYGMMQKAYTLTDHTPQDQMDYIKDVFYLYLDVLAADIGHKWDLHSRPRKEIEDEVLAIELQIRKDSLGLIDGGKN*
Ga0068468_100059256	F024573	N/A	MCISFGRRSPTPVSTPAPIQPRQPDLVSAARLPSKKELLDPDDTAGVEYGTSSKKDDTRGAAIRTGTDALKININTGGGGEGTGGLNV*
Ga0068468_10005927	F049704	AGGA	MTDKYYYYRARMGTGKHIHLFARDDIEAAYRAAHIAKWHWNTTLEDIYLDKHHHYNEERISKQLQHDKELPS*