Scaffold Ga0068490_1121209

Overview

Basic Information

• Taxon OID: 3300006303
• Scaffold ID: Ga0068490_1121209
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT234_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3823
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004642	Metagenome / Metatranscriptome	429	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068490_11212093	F004642	N/A	MNKPAFSETVPNELKELGYVPPIIKSYDNNGINVWLDKRRKWYDVPFWQFTMDGIQWMVLDERHGSASQFYSHYKLAKGHVICTGLGFGTREQWLASKPEVTKITVLEKFKEVIDYHKDIGTKWPDKIEIINCDANDYKGSCDFLSIDHYEYDDVLRILDSIKTVCNNITCESAWFWMLEPWIRLGYITDNTENPTIIPKKIRYGGKENDILENYSKIKTYFEHVNLPNLNKEQLTKFIEMY*