Scaffold Ga0099617_100284

Overview

Basic Information

• Taxon OID: 3300006301
• Scaffold ID: Ga0099617_100284
• Source Dataset Name: Human buccal mucosa microbial communities from NIH, USA - visit 2 of subject 764224817
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11592
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F067847	Metagenome	125	N
F081456	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099617_10028413	F067847	AGGA	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELKNL*
Ga0099617_10028420	F018385	GGAG	MAEYENQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTIYSPEGRVNKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*
Ga0099617_1002849	F081456	AGGAG	MFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPISFMAKLVMTAIGFLLCAMTVILYTISAE*